Patin NV, Jesser KJ, Peña-Gonzalez A, Hatt JK, Trueba G, Levy K, Konstantinidis KT. 2022. Comparison of metagenomic and traditional methods for diagnosis of E. coli enteric infections. Under revision for mBio.
Patin NV and Goodwin KD. 2022. Capturing marine microbiomes and environmental DNA: A field sampling guide. Frontiers in Microbiology. Research Topic: Towards Standard Methods and Best Practices. https://doi.org/10.3389/fmicb.2022.1026596.
Patin NV and Goodwin KD. 2022. Long-read sequencing improves recovery of marine picoeukaryotic genomes and provides insight into zooplankton biogeography. mSystems e00595-22. https://doi.org/10.1128/msystems.00595-22
Thompson LR, Anderson SR, Den Uyl PA, Patin NV, Sanderson G, Goodwin KD. 2022. Tourmaline: a workflow for rapid and reproducible amplicon sequence analysis using QIIME 2 and Snakemake. GigaScience 11:giac066. https://doi.org/10.1093/gigascience/giac066
Truelove N, Patin NV, Min M, Pitz K, Preston C, Yamahara K, Zhang Y, Raanan B, Kieft B, Hobson B, Thompson LR, Goodwin KD, Chavez FP. Expanding the temporal and spatial scales of environmental DNA research with autonomous sampling. Environmental DNA, 4, 972– 984. https://doi.org/10.1002/edn3.299
Demko A, Patin NV, Jensen PR. 2021. Culture-dependent and culture-independent microbial diversity in tropical marine sediments. Environmental Microbiology 23 (11): 6859-6875. doi: 10.1111/1462-2920.15798 Caughman A, Pratte ZA, Patin NV, Stewart PJ. 2021. Coral microbiome changes over the day-night cycle. Coral Reefs. https://doi.org/10.1007/s00338-021-02097-8.
Patin NV, Dietrich ZA, Stancil A, Quinan M, Beckler JS, Hall ER, Culter J, Smith CG, Taillefert M, Stewart FJ. 2021. Gulf of Mexico blue hole harbors high levels of novel microbial lineages. The ISME Journal. doi: s41396-021-00917-x
Abdelrahman SM, Patin NV, Hanora AM, Aboseidah AA, Desoky SM, Desoky FG, Stewart FJ, Lopanik NB. 2021. PeerJ. The natural product biosynthetic potential of Red Sea nudibranch microbiomes. 9:e10525 https://doi.org/10.7717/peerj.10525.
Patin NV, Peña-Gonzalez A, Hatt JK, Moe C, Kirby A, Konstantinidis KT. 2020. The role of the gut microbiome in resisting norovirus infection as revealed by a human challenge study. mBio. 11 (6) e02634-20. Patin NV, Brown E, Garfield C, Chebli G, Kubanek J, Stewart FJ. 2019. Microbial and chemical dynamics of a toxic dinoflagellate bloom. PeerJ. 8:e9493 https://doi.org/10.7717/peerj.9493
Thamdrup B, Steinsdottir HGR, Bertagnolli AD, Padilla CC, Patin NV, Garcia-Robledo E, Bristow L, Stewart FJ. 2019. Anaerobic methane oxidation is an important sink for methane in the ocean's largest oxygen minimum zone. Limnology and Oceanography. 9999: 1-17. doi:10.1002/lno.11235
Patin NV, Locklear S, Stewart FJ, Lopanik NB. 2019. Symbiont frequency predicts microbiome composition in a model bryozoan-bacterial symbiosis. Aquatic Microbial Ecology. 83: 1-13. doi: 10.3354/ame01901 Tuttle RN, Demko A, Patin NV, Kapono C, Dorrestein PC, Jensen PR. 2019. The detection of specialized metabolites and their producers in ocean sediments. Applied and Environmental Microbiology. doi: 10.1128/AEM.02830-18
Pratte ZA, Patin NV, McWhirt M, Caughman A, Stewart FJ. 2018. Association with a sea anemone alters the skin microbiome of clownfish. Coral Reefs. doi: 10.1007/s00338-018-01750-z
Patin NV, Floros D, Dorrestein PC, Hughes C, Jensen PR. 2018. The role of inter-species interactions in Salinispora specialized metabolite production. Microbiology. doi: 10.1099/mic.0.000679.
Patin NV, Pratte ZA, Regensburger M, Gilde K, Hall E, Dove ADM, Stewart FJ. 2017. Microbiome dynamics of a large artificial seawater aquarium. Applied and Environmental Microbiology. doi: 10.1128/AEM.00179-18
Patin NV, Schorn M, Aguinaldo K, Lincecum T, Moore BS, Jensen PR. 2016. Effects of actinomycete secondary metabolites on sediment microbial communities. Applied and Environmental Microbiology. doi: 10.1128/AEM.002676-16
Schorn M, Alanjary M, Aguinaldo K, Korobeynikov A, Podell S, Patin NV, Lincecum T, Jensen PR, Ziemert N, Moore BS. 2016. Sequencing rare actinomycete genomes reveals high density of unique natural product biosynthetic gene clusters. Microbiome.
Patin NV, Duncan K, Dorrestein PC, Jensen PR. 2016. Competitive strategies differentiate closely related species of marine actinobacteria. The ISME Journal. 10: 478-490.
Wietz M, Duncan K, Patin NV, Jensen PR. 2013. Antagonistic interactions mediated by marine bacteria: the role of small molecules. Journal of Chemical Ecology. 9: 879-891. Patin NV, Kunin V, Lidstrom U, Ashby M. 2012. Effects of OTU clustering and PCR artifacts on microbial diversity estimates. Microbial Ecology. 65 (3).